| 12 Reasons Why I Love Her | Oni | 2006 |
| Adventures of Barry Ween, Boy Genius 2.0, The | Oni | 2000 |
| Adventures of Barry Ween, Boy Genius 3: Monkey Tales | Oni | 2003 |
| Adventures of Barry Ween, Boy Genius, The: Secret Crisis Origin Files | Oni | 2004 |
| Adventures of Rheumy Peepers & Chunky Highlights, The | Oni | 1999 |
| Alison Dare and the Heart of the Maiden | Oni | 2002 |
| Alison Dare, Little Miss Adventures | Oni | 2000, 2002 |
| Armageddon & Son | Oni | 2005 |
| Awakening, The (Oni) | Oni | 2004 |
| Bad Boy | Oni | 1997, 2008 |
| Bad Medicine | Oni | 2012 |
| Banana Sunday | Oni | 2005 |
| Big Book of Barry Ween, Boy Genius, The | Oni | 2009 |
| Blair Witch Chronicles, The | Oni | 2000 |
| Blair Witch Project, The | Oni | 1999 |
| Blue Monday: Absolute Beginners | Oni | 2001 |
| Blue Monday: Dead Man’s Party | Oni | 2002 |
| Blue Monday: Inbetween Days | Oni | 2003 |
| Blue Monday: Lovecats | Oni | 2002 |
| Blue Monday: Nobody’s Fool | Oni | 2003 |
| Blue Monday: Painted Moon | Oni | 2004-2005 |
| Blue Monday: The Kids Are Alright | Oni | 2000 |
| Blue Monday: Thieves Like Us | Oni | 2008 |
| Borrowed Time | Oni | 2006 |
| Breakfast After Noon | Oni | 2000-2001 |
| Capote in Kansas | Oni | 2005 |
| Cheat | Oni | 2003 |
| Clerks: The Comic Book | Oni | 1998, 2001 |
| Closer | Oni | 2004 |
| Coffin, The | Oni | 2000 |
| Complete Geisha, The | Oni | 2003 |
| Courtney Crumrin & the Coven of Mystics | Oni | 2002-2003 |
| Courtney Crumrin & the Fire Thief’s Tale | Oni | 2007 |
| Courtney Crumrin & The Night Things | Oni | 2002 |
| Courtney Crumrin and the Prince of Nowhere | Oni | 2008 |
| Courtney Crumrin in the Twilight Kingdom | Oni | 2003-2004 |
| Courtney Crumrin Tales | Oni | 2005, 2011 |
| Crash Metro & the Star Squad | Oni | 1999 |
| Crogan’s Vengeance | Oni | 2008 |
| Cut My Hair | Oni | 2003 |
| Damned, The (Oni) | Oni | 2006 |
| Damned: Prodigal Sons | Oni | 2008 |
| Days Like This | Oni | 2003 |
| Deep Sleeper | Oni | 2004 |
| Dumped | Oni | 2002 |
| Eno & Plum | Oni | 1998 |
| Everlasting, The | Oni | |
| Festering Romance | Oni | 2009 |
| First In Space | Oni | 2007 |
| Fortune and Glory | Oni | 1999-2000 |
| Free Scott Pilgrim | Oni | 2006 |
| Free Speeches | Oni | 1998 |
| Frenemy Of The State | Oni | 2010–2011 |
| Frumpy the Clown | Oni | 2001 |
| F-Stop | Oni | 2005 |
| Geisha | Oni | 1998-1999 |
| Geisha One-Shot | Oni | 2000 |
| Ghost Projekt | Oni | 2010–2011 |
| Gray Horses | Oni | 2006 |
| Grrl Scouts (Jim Mahfood’s…) | Oni | 1999-2000, 2003 |
| Gunwitch, The: Outskirts of Doom | Oni | 2001 |
| Have You Seen The Horizon Lately? | Oni | 2007 |
| Helheim | Oni | 2013 |
| Hopeless Savages | Oni | 2001 |
| Hopeless Savages: B-sides: The Origin of the Dusted Bunnies | Oni | 2005 |
| Hopeless Savages: Ground Zero | Oni | 2002 |
| Hysteria | Oni | 2004 |
| Hysteria: An Uzi on the Island/Sharknife | Oni | 2005 |
| It Girl | Oni | 2002 |
| Ivy | Oni | 2011 |
| I Was Someone Dead | Oni | 2005 |
| Jam! Tales from the World of Roller Derby | Oni | 2010 |
| Jason and the Argobots | Oni | 2002-2003 |
| Jay & Silent Bob | Oni | 1998, 1999, 2001 |
| Jenny Finn | Oni | 1999 |
| Jetcat Clubhouse | Oni | 2001 |
| Jingle Belle (Oni) | Oni | 1999-2000 |
| Jingle Belle: Dash Away All! | Oni | 2003 |
| Jingle Belle Jubilee | Oni | 2002 |
| Jingle Belle’s All-Star Holiday Hullabaloo | Oni | 2000 |
| Jingle Belle’s Cool Yule | Oni | 2002 |
| Jingle Belle: The Mighty Elves (Paul Dini’s…) | Oni | 2001 |
| Jingle Belle Winter Wingding (Paul Dini’s…) | Oni | 2002 |
| Julius | Oni | |
| Jumper: Jumpscars | Oni | 2008 |
| Keif Llama: Gas War | Oni | 1999 |
| Killer Princesses | Oni | 2002, 2004 |
| Kissing Chaos | Oni | 2003 |
| Kissing Chaos: 1000 Words | Oni | 2003 |
| Kissing Chaos: Nine Lives | Oni | 2003 |
| Kissing Chaos: Nonstop Beauty | Oni | 2003 |
| Labor Days | Oni | 2008 |
| Land of Nod Treasury, The | Oni | 2001 |
| Last Call, The | Oni | 2007 |
| Last Exit Before Toll | Oni | 2003 |
| Leading Man, The | Oni | 2006–2007 |
| Little Star | Oni | 2005-2006 |
| Local | Oni | 2005-2006 |
| Long Haul, The | Oni | 2005 |
| Lost at Sea | Oni | 2005 |
| Love as a Foreign Language | Oni | 2004–2007 |
| Love Buzz | Oni | 2009 |
| Love Fights | Oni | 2003-2004 |
| Love the Way You Love | Oni | 2006–2007 |
| Madman King-Size Super Groovy Special | Oni | 2003 |
| Magic Pickle | Oni | 2001 |
| Maintenance | Oni | 2006–2008 |
| Maria’s Wedding | Oni | 2003 |
| Marquis, The: A Sin of One | Oni | 2003 |
| Marquis, The: Danse Macabre | Oni | 2000 |
| Marquis, The: Devil’s Reign | Oni | 2002 |
| Midnight Mover | Oni | 2003 |
| Mr. Gum | Oni | 2003 |
| Mondo Urbano | Oni | 2010 |
| Multiple Warheads | Oni | 2007 |
| Mutant, Texas: Tales of Sheriff Ida Red | Oni | 2002, 2006 |
| My Inner Bimbo | Oni | 2006-2008 |
| Narcoleptic Sunday | Oni | 2007 |
| Nobody | Oni | 1998-2000 |
| Nocturnals: The Dark Forever | Oni | 2001–2002 |
| Nocturnals: Troll Bridge | Oni | 2000 |
| Nocturnals: Unhallowed Eve | Oni | 2002 |
| No Dead Time | Oni | 2004 |
| Northwest Passage | Oni | 2005-2006 |
| North World | Oni | 2008 |
| Off Road | Oni | 2005 |
| Ojo | Oni | 2004-2005 |
| Once in a Blue Moon | Oni | 2004 |
| One Bad Day | Oni | 2003 |
| One Plus One | Oni | 2002-2003 |
| Oni Double Feature | Oni | 1998-1999 |
| Oni Press Ashcan 1998 | Oni | 1998 |
| Oni Press Ashcan 2000 | Oni | 2000 |
| Oni Press Color Special | Oni | 2002 |
| Oni Press Free-For-All | Oni | 2010 |
| Oni Press Summer Vacation Supercolor Fun Special | Oni | 2000 |
| Only the End of the World Again | Oni | 2000 |
| Past Lies | Oni | 2006, 2010 |
| Peng! | Oni | 2005 |
| Polly and the Pirates | Oni | 2005-2006, 2012 |
| Possessions | Oni | 2010 |
| Pounded | Oni | 2002 |
| Queen & Country | Oni | 2001-2008 |
| Queen & Country: Declassified | Oni | 2002-2003 |
| Queen & Country: Declassified (Vol. 2) | Oni | 2005-2006 |
| Queen & Country: Declassified (Vol. 3) | Oni | 2005 |
| Rascal Raccoon’s Raging Revenge | Oni | 2011 |
| Rated Free For Everyone | Oni | 2011 |
| Resurrection | Oni | 2007–2008 |
| Resurrection (Vol. 2) | Oni | 2009 |
| Return of Alison Dare, The: Little Miss Adventures | Oni | 2001 |
| Return of King Doug, The | Oni | 2009 |
| Road Trip | Oni | 2000 |
| St. Swithin’s Day (Oni) | Oni | 1998 |
| Salt Water Taffy | Oni | 2008 |
| Scandalous | Oni | 2004 |
| Scooter Girl | Oni | 2003-2004 |
| Scott Pilgrim | Oni | 2004–2010 |
| Sharknife | Oni | 2005, 2012 |
| Shenanigans | Oni | 2007 |
| Shot Callerz | Oni | 2002 |
| Sidekicks: Super Fun Summer Special | Oni | 2003 |
| Sidekicks: The Substitute | Oni | 2002 |
| Sidekicks: The Transfer Student | Oni | 2002 |
| Sidescrollers | Oni | 2006 |
| Sixth Gun, The | Oni | 2010-2012 |
| Skinwalker | Oni | 2002-2003 |
| Spontaneous | Oni | 2011 |
| Spooked | Oni | 2004 |
| Strangers, The (Oni) | Oni | 2013 |
| Strangetown | Oni | 2006 |
| Stumptown | Oni | 2009-2010 |
| Stupid Comics | Oni | 2000 |
| Super Pro K.O. | Oni | 2010 |
| Tek Jansen (Stephen Colbert’s…) | Oni | 2007-2009 |
| Three Days in Europe | Oni | 2002 |
| Three Strikes | Oni | 2003 |
| Tomb, The | Oni | 2004 |
| Too Much Hopeless Savages! | Oni | 2003-2004 |
| Tooth | Oni | 2011 |
| Trout | Oni | 2002 |
| True Tales of Roller Derby: Doppleganger at the Hanger | Oni | 2009 |
| Uncle Slam Fights Back | Oni | 2008 |
| Union Station | Oni | 2003 |
| Volcanic Revolver | Oni | 1999 |
| Voodoom | Oni | 2000 |
| Wasteland (Oni) | Oni | 2006-2012 |
| Wet Moon | Oni | 2004, 2006–2007, 2012 |
| Whiteout | Oni | 1998-1999 |
| Whiteout: Melt | Oni | 1999-2000 |
| Wonton Soup | Oni | 2007–Present |
| Yo Gabba Gabba! Free Comic Book Day! | Oni | 2012 |
| Yo Gabba Gabba! Gabba Ball! | Oni | 2010 |
| Yo Gabba Gabba! Good Night, Gabbaland | Oni | 2010 |
| You Have Killed Me | Oni | 2009 |